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FlyBase Genes
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- Tracks
- Chromatin Structure
-  Chromatin Proteins
-  Agilent array
   
Agilent Array [?] [showing 3/3 subtracks]  
-  ChIP-chip (Grouped by Cell Line)
   
Chromatin Proteins in CME W1 cl.8+ cells [?] [showing 4/4 subtracks] Chromatin Proteins in ML-DmBG3-c2 cells [?] [showing 11/11 subtracks] Chromatin Proteins in S2-DRSC cells [?] [showing 19/19 subtracks]
Chromatin Proteins in Kc167 cells [?] [showing 4/4 subtracks] Chromatin Proteins in Oregon strain [?] [showing 4/4 subtracks] 
-  Insulators
   
Insulators ChIP-Chip [?] [showing 10/10 subtracks] Insulators ChIP-Seq [?] [showing 2/2 subtracks] 
-  Histone Modifications
- ChIP-chip (Grouped by Cell Line)
   
Histone modifications in CME W1 cl.8+ cells [?] [showing 5/5 subtracks] Histone modifications in ML-DmBG3-c2 cells [?] [showing 17/17 subtracks] Histone modifications in S2-DRSC cells [?] [showing 22/22 subtracks]
Histone modifications in Kc167 cells [?] [showing 4/4 subtracks] Histone modifications in Oregon strain [?] [showing 11/11 subtracks] 
- ChIP-Seq
   
ChIP-Seq: Histone Modifications in Adult Female [?] [showing 4/4 subtracks] ChIP-Seq: Histone Modifications in embryo 16-20hr [?] [showing 6/6 subtracks] ChIP-Seq: Histone Modifications in L1 [?] [showing 6/6 subtracks]
ChIP-Seq: Histone Modifications in Adult Male [?] [showing 5/5 subtracks] ChIP-Seq: Histone Modifications in embryo 20-24hr [?] [showing 6/6 subtracks] ChIP-Seq: Histone Modifications in L2 [?] [showing 7/7 subtracks]
ChIP-Seq: Histone Modifications in embryo 0-4hr [?] [showing 6/6 subtracks] ChIP-Seq: Histone Modifications in embryo 4-8hr [?] [showing 6/6 subtracks] ChIP-Seq: Histone Modifications in L3 [?] [showing 5/5 subtracks]
ChIP-Seq: Histone Modifications in embryo 12-16hr [?] [showing 6/6 subtracks] ChIP-Seq: Histone Modifications in embryo 8-12hr [?] [showing 6/6 subtracks] ChIP-Seq: Histone Modifications in Pupae [?] [showing 6/6 subtracks]
- ChIP-chip
   
ChIP-chip: Histone Modifications in Adult Female [?] [showing 6/6 subtracks] ChIP-chip: Histone Modifications in embryo 16-20hr [?] [showing 6/6 subtracks] ChIP-chip: Histone Modifications in L1 [?] [showing 6/6 subtracks]
ChIP-chip: Histone Modifications in Adult Male [?] [showing 9/9 subtracks] ChIP-chip: Histone Modifications in embryo 20-24hr [?] [showing 6/6 subtracks] ChIP-chip: Histone Modifications in L2 [?] [showing 6/6 subtracks]
ChIP-chip: Histone Modifications in embryo 0-12hr [?] [showing 4/4 subtracks] ChIP-chip: Histone Modifications in embryo 4-8hr [?] [showing 6/6 subtracks] ChIP-chip: Histone Modifications in L3 [?] [showing 6/6 subtracks]
ChIP-chip: Histone Modifications in embryo 0-4hr [?] [showing 9/9 subtracks] ChIP-chip: Histone Modifications in embryo 8-12hr [?] [showing 6/6 subtracks] ChIP-chip: Histone Modifications in Pupae [?] [showing 5/5 subtracks]
ChIP-chip: Histone Modifications in embryo 12-16hr [?] [showing 6/6 subtracks] ChIP-chip: Histone Modifications in Kc167 cells [?] ChIP-chip: Histone Modifications in S2-DRSC cells [?]
-  Histone Modifying Enzymes (Grouped by Cell Line)
   
Histone Modifying Enzymes in ML-DmBG3-c2 cells [?] [showing 5/5 subtracks] Histone Modifying Enzymes in S2-DRSC cells [?] [showing 9/9 subtracks] 
- DNA replication
-  Copy Number Variation
   
CGH array scores [?] [showing 4/4 subtracks] CGH Scores (Tissues) [?] [showing 2/2 subtracks] Copy Number Variation [?] [showing 4/4 subtracks]
CGH array scores (Cell lines) [?] CGH Scores Replicates (Tissues) [?] [showing 4/4 subtracks] 
-  Origins of Replication
   
ChIP-Seq dORC2 [?] [showing 3/3 subtracks] ChIP-Seq dORC2 Replicates (Tissues) [?] [showing 6/6 subtracks] Early origins of replication [?] [showing 3/3 subtracks]
ChIP-Seq dORC2 (Replicates) [?] [showing 6/6 subtracks] ChIP-Seq MCM [?] [showing 2/2 subtracks] 
ChIP-Seq dORC2 (Tissues) [?] [showing 3/3 subtracks] ChIP-Seq MCM (Replicates) [?] [showing 4/4 subtracks] 
-  Replication Timing and pre-RC components
   
pre-RC components [?] [showing 2/2 subtracks] Replication Timing [?] [showing 3/3 subtracks] 
- Gene Expression
- Gene Expression
   
EST (all) [?] EST (spliced) [?] 
-  ESTs and mRNAs
   
full length cDNAs [?]  
- Developmental Stages
   
Transcribed Fragments 0-24 hrs [?] Transcription Levels 0-24 hrs [?] 
- Gene Models and Predictions
   
CONGO exons [?] FlyBase Genes [?] 
- Gene Structure
-  Gene Models
-  Gene Structures from modENCODE
   
DMG1 gene models [?] DMG3 gene models [?] MB7 gene models [?]
DMG2 gene models [?] DMG4 gene models [?] 
-  RTPCR from modENCODE
   
DMG1 RTPCR [?] DMG2 RTPCR target gene models [?] DMG4 RTPCR [?]
DMG1 RTPCR target gene models [?] DMG3 RTPCR [?] DMG4 RTPCR target gene models [?]
DMG2 RTPCR [?] DMG3 RTPCR target gene models [?] 
-  cDNA
   
cDNAs [?]  
- General
   
AdultFemale RNA-seq Embryo 16-20h RNA-seq L1 RNA-seq
AdultMale RNA-seq Embryo 20-24h RNA-seq L2 RNA-seq
Embryo 0-4h RNA-seq Embryo 4-8h RNA-seq L3 RNA-seq
Embryo 12-16h RNA-seq Embryo 8-12h RNA-seq Pupae RNA-seq
- Genome Features
   
miRBase miRNAs [?] Non-coding RNAs [?] tRNAs
Natural Transposons [?] Transposon insertion site [?] 
- Genome Reagents
   
Affymetrix GeneChip 2 [?]  
- RNA Expression Profiling
-  mRNA
-  RNA tiling arrays (38bp)
   
Cell Lines [?] [showing 32/32 subtracks] Embryonic (Total) [?] [showing 12/12 subtracks] Post-embryonic (Total) [?] [showing 16/16 subtracks]
Embryonic (PolyA) [?] [showing 11/11 subtracks] Oregon-R Embryonic (polyA) [?] [showing 2/2 subtracks] Tissues [?] [showing 3/3 subtracks]
-  ncRNA
-  small ncRNA reads (IP-enriched)
-  Cell Lines
   
S2-DRSC Ago1-HA IP [?] S2-DRSC Ago2-HA IP [?] 
-  Tissues
   
Adult ovaries Ago2-HA IP [?] Canton-S ovaries Ago1-HA IP [?] r2d2 ovaries Ago1-HA IP [?]
Ago-2 [414] ovaries Ago1-HA IP [?] dcr-2 [L811fsX] ovaries Ago1-HA IP [?] 
-  small ncRNA reads
-  Cell Lines
   
1182-4Hcell/BS23 [?] ML-DmBG1c1/BS176 [?] S2 Rubin + Ecdysone [?]
CME L1/BS28 [?] ML-DmBG3-c2/BS179 [?] S2-DRSC (Rubin) [?]
CME W1 cl.8+ [?] ML-DmD21/BS88 [?] S2-DRSC cells [?]
GM2cell/BS32 [?] ML-DmD21cell/BS90 [?] S2-DRSC/BS11 [?]
K167 cells [?] ML-DmD32/BS26 [?] S2-DRSC/Kc167 + Ecdysone [?]
Kc Rubin +Ecdysone [?] ML-DmD9/BS102 [?] S2-NP (Norbert Perrimon) [?]
Kc167 (Rubin) [?] MLDmD20c5/BS16 [?] S2R+ 2reps [?]
Kc167 2reps [?] Ovary Somatic Sheet [?] Sg4/BS35 [?]
-  Embryonic stages
   
Canton-S Embryo 0-1h [?] Canton-S Embryo 2-18h Non-irradiated [?] Canton-S Embryo 6-10h (2) [?]
Canton-S Embryo 0-1h (2) [?] Canton-S Embryo 2-6h [?] Embryo 12-24h/BS61-64-67-73 [?]
Canton-S Embryo 12-24h [?] Canton-S Embryo 2-6h (2) [?] Embryo 2-6h/BS43-46 [?]
Canton-S Embryo 2-18h Irradiated [?] Canton-S Embryo 6-10h [?] 
-  Post-embryonic stages
   
1-day adult Female/BS152 [?] Canton-S L3 [?] Canton-S Pupae 2-4d [?]
1-day adult Male/BS149 [?] Canton-S L3 (2) [?] Canton-S Pupae 2-4d (2) [?]
Canton-S L1 [?] Canton-S Pupae 0-1d [?] 
Canton-S L1 (2) [?] Canton-S Pupae 0-2d [?] 
-  Score/Quality Plots
   
Small RNA sequence data (Cell lines) [?] [showing 24/24 subtracks] Small RNA sequence data (IP-Enriched Cell Line samples) [?] [showing 2/2 subtracks] Small RNA sequence data (Post-embryonic stages) [?] [showing 10/10 subtracks]
Small RNA sequence data (Embryonic stages) [?] [showing 11/11 subtracks] Small RNA sequence data (IP-Enriched Tissue samples) [?] [showing 5/5 subtracks] Small RNA sequence data (Tissues) [?] [showing 21/21 subtracks]
-  Tissues
   
Adult ovaries 2-4 days Y cn br sp flies [?] Canton-S Adult Female Head (2) [?] Canton-S Adult Male Head (2) [?]
Adult ovaries Dcr-2L811fsX (2-4 days flies) [?] Canton-S Adult Female Head Aged [?] Canton-S Adult ovaries [?]
Adult ovaries loqs f00791 (2-4 days flies) [?] Canton-S Adult Female Head Heat Shocked [?] Canton-S Female Body [?]
Adult testis 2-4 days Y cn br sp flies [?] Canton-S Adult Male Body [?] Canton-S Imaginal Disk [?]
Ago2[414] ovaries [?] Canton-S Adult Male Body [?] Dcr-2 [L811fsX] Ovary [?]
Canton-S Adult Female body (2) [?] Canton-S Adult Male body (2) [?] Imaginal Disc + brain [?]
Canton-S Adult Female Head [?] Canton-S Adult Male Head [?] r2d2 Ovary [?]
- Sequence
   
3-frame translation (forward) [?] 3-frame translation (reverse) [?] DNA/GC Content [?]
- Transcription Factors
- ChIP-Seq
   
Chip-Seq (Chromatin Silencers Antibodies) [?] [showing 10/10 subtracks] ChIP-Seq (Gap genes Antibody) [?] [showing 3/3 subtracks] ChIP-Seq (PolII Antibody) [?] [showing 9/9 subtracks]
ChIP-Seq (Ecdysone Receptor Antibodies) [?] [showing 3/3 subtracks] ChIP-Seq (Nejire Antibody) [?] [showing 11/11 subtracks] 
- ChIP-chip
   
Chip-Chip (Chromatin Silencers Antibodies) [?] [showing 10/10 subtracks] ChIP-Chip (Network Co-factors Antibody) [?] [showing 2/2 subtracks] ChIP-Chip (Trithorax group TFs Antibody) [?] [showing 3/3 subtracks]
ChIP-Chip (CNS TFs Antibody) [?] [showing 6/6 subtracks] ChIP-Chip (Neurogenic TFs Antibody) [?] [showing 2/2 subtracks] ChIP-Chip (Various TFs Antibody) [?] [showing 7/7 subtracks]
ChIP-Chip (Gap genes Antibody) [?] [showing 5/5 subtracks] ChIP-Chip (Pair-rule TFs Antibody) [?] ChIP-Chip PolII (8WG16 Antibody) [?] [showing 8/8 subtracks]
ChIP-Chip (Homeotic genes Antibody) [?] [showing 4/4 subtracks] ChIP-Chip (PolII Antibody) [?] [showing 4/4 subtracks] TotalRNA Chip-Chip (no Antibody) [?]
ChIP-Chip (Late Co-factors Antibody) [?] ChIP-Chip (Proneural TFs Antibody) [?] [showing 4/4 subtracks] 
ChIP-Chip (Nejire Antibody) [?] [showing 12/12 subtracks] ChIP-Chip (Segment polarity TFs Antibody) [?] [showing 5/5 subtracks] 
- modENCODE Tracks
-  Celniker Group
- RNA-Seq
-  Cell Line
   
CME_W1_Cl.8+ (polyA) [?] ML-DmBG3 (polyA) [?] 
Kc167 (polyA) [?] S2-DRSC (polyA) [?] 
-  Developmental Stage
   
Whole Adult Fly [?]  
-  Henikoff Group
   
Chromatin fractions extracted with NaCl [?] [showing 3/3 subtracks] H33 [?] Nucleosome (XY-plot) [?]
H3 [?] H33 (XY-plot) [?] 
H3 (XY-plot) [?] Nucleosomal [?] 
-  White Group
-  RNA-Seq
   
AdultFemale RNA-seq [?] Embryo 16-20h RNA-seq [?] L1 RNA-seq [?]
AdultMale RNA-seq [?] Embryo 20-24h RNA-seq [?] L2 RNA-seq [?]
Embryo 0-4h RNA-seq [?] Embryo 4-8h RNA-seq [?] L3 RNA-seq [?]
Embryo 12-16h RNA-seq [?] Embryo 8-12h RNA-seq [?] Pupae RNA-seq [?]
- Analysis
   
Restriction Sites UCSC Conservation  
UCSC Chains UCSC Nets  

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Generic Genome Browser version 2.40. For questions about the data at this site, please contact its webmaster. For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.